FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007961824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462143
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG19360.4189179539666294No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16800.3635238443512073No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15850.3429674364861093No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14980.3241420945464932No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13530.29276652464713304No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13260.2869241771486315No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG11490.24862434354734358No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10900.23585773234691426No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG10830.23434304966211758No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10270.22222558818374402No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9700.20989174346468514No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9490.2053476954102951No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG9470.2049149289289246No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8620.186522353470679No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8510.18414213782314132No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8350.18068000597217745No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8120.17570319143641686No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8020.17353935902956444No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7720.16704786180900716No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7650.16553317912421048No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7430.16077274782913514No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7140.1544976338492631No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6810.1473569869066501No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6740.1458423042218534No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6690.1447603880184272No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6590.14259655561157478No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6180.13372484274347984No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6160.13329207626210934No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5670.12268929746853247No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5580.12074184830236528No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5400.11684694997003092No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5300.1146831175631785No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5140.11122098571221462No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG4900.1060277879357688No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4840.10472948849165735No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)