FastQCFastQC Report
Wed 8 May 2024
EGAF00007961825

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961825
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462143
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22770.49270463904029704No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC21360.4621946021036778No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18730.40528580980345913No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18550.4013909114711247No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17050.36893342536833834No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16670.36071086222229914No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14620.31635229788182445No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13950.30185462075591324No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC13200.28562587770452No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12490.2702626676158678No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11140.2410509301233601No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11110.24040178040130436No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10340.2237402708685407No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG10190.22049452225826205No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9430.2040493959661836No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9400.2034002462441279No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9150.19799066522699685No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8850.19149916800643957No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8430.18241107189765937No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8140.17613595791778736No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8090.17505404171436115No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7970.17245744282613823No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7400.1601235981070794No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7260.15709423273748602No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7070.15298295116446642No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6710.1451931544997977No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6580.1423801723708895No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6550.1417310226488338No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6480.1402163399640371No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5920.12809887848566354No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5500.11901078237688334No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5290.11446673432249324No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5120.11078821923084413No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5050.10927353654604745No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4990.10797523710193598No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4960.10732608737988025No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4870.10537863821371307No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4700.10170012312206395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)