FastQCFastQC Report
Wed 8 May 2024
EGAF00007961827

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961827
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444402
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21550.48492130998510363No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21390.4813209661522676No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19910.44801778569853423No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18690.42056516397315946No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17920.403238509277636No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16690.375560866062709No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15990.3598093617940513No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14200.31953051516419817No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13100.2947781513134505No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12680.28532724875225585No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11650.2621500353283739No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11110.24999887489255226No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10560.23762269296717836No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10270.23109706977016306No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG9840.2214211457194162No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8690.1955436744209072No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8440.18991813718210088No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8420.1894680942029964No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8390.18879302973433965No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8390.18879302973433965No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8160.18361753547463783No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8110.18249242802687657No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7480.16831607418508468No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7260.1633656014149351No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6640.14941426906269548No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6390.14378873182388918No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6310.14198855990747117No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6260.1408634524597099No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6000.13501289373135134No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5620.12646207712836574No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5370.12083653988955946No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5320.11971143244179819No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5200.11701117456717117No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5150.11588606711940991No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5060.11386087371343964No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4950.11138563732836487No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4530.10193473476717027No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4470.10058460582985675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)