FastQCFastQC Report
Wed 8 May 2024
EGAF00007961836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491452
Total Bases21.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12690.258214433963032No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10730.21833261437536117No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9350.19025255772689906No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT8840.17987514548725003No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8610.17519513604583967No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8490.17275339198945167No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6720.13673766715772853No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG5820.11842458673481845No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5550.11293066260794545No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC4970.10112889966873671No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)