FastQCFastQC Report
Wed 8 May 2024
EGAF00007961837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491452
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25860.526195844151616No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12810.26065617801942No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10760.2189430503894582No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10080.2051065007365928No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT9540.19411865248284674No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8390.170718605275795No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8280.16848033989077263No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6890.14019680457094488No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6640.1351098377868032No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT6320.12859852030310184No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5150.10479151575331874No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC5090.10357064372512473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)