FastQCFastQC Report
Wed 8 May 2024
EGAF00007961838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457299
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11380.2488525013175187No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10250.22414219143273875No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT8690.19002884327321948No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8600.18806076549478568No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8060.17625229882418286No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7540.16488118277100977No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6540.1430136518995231No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG5910.12923710745048644No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC4780.10452679756570646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)