FastQCFastQC Report
Wed 8 May 2024
EGAF00007961839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457299
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59731.306147618953901No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11390.24907117662623363No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10230.223704840815309No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9120.19943188154795877No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT9110.1992132062392439No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8110.1773456753677572No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7360.16094502721414217No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6610.14454437906052714No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT6210.13579736671193246No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5070.1108683815184376No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC4800.1049641481831362No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)