FastQCFastQC Report
Wed 8 May 2024
EGAF00007961840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494388
Total Bases21.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12540.25364693317798975No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11080.2241154720583833No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9550.19316811896728886No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8910.1802228209422559No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT8900.18002055066061476No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8850.17900919925240905No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7080.14320735940192722No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG5590.11306908743739735No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC5400.10922595208621569No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)