FastQCFastQC Report
Wed 8 May 2024
EGAF00007961841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494388
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27680.5598841395826759No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12970.26234455528855877No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11220.22694725600135926No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10540.2131928768497617No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT9530.19276357840400657No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8780.17759330728092107No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8750.17698649643599762No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7070.1430050891202861No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT6030.12196897982960753No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5760.11650768222529673No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC5410.10942822236785683No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5210.10538281673503404No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)