FastQCFastQC Report
Wed 8 May 2024
EGAF00007961842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465802
Total Bases20.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11290.2423776626120111No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10730.23035538705286793No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9300.19965564767862742No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT8170.17539641306821352No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7400.1588657841743917No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7230.15521616480822326No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6850.14705819210737608No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG5580.11979338860717643No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC4920.10562427812675773No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)