FastQCFastQC Report
Wed 8 May 2024
EGAF00007961843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465802
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62741.3469242296082884No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11460.24602728197817958No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10750.2307847540371231No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9770.20974577180862256No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT8710.18698932164310159No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7260.1558602152846059No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7260.1558602152846059No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7050.15135186194992722No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT6010.12902477876866136No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5180.11120604892207418No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC5010.10755642955590572No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)