FastQCFastQC Report
Wed 8 May 2024
EGAF00007961853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480880
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25090.5217517883879554No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24080.5007486275162202No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15790.32835634669772085No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11490.2389369489269672No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11360.23623357178506071No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC7930.1649060056562968No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6340.13184162368990185No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6220.1293461986358343No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5880.1222758276493096No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5750.1195724505074031No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5640.1172849775411745No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5550.11541340875062386No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5420.11271003160871736No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)