FastQCFastQC Report
Wed 8 May 2024
EGAF00007961855

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961855
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443676
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57521.296441547435516No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21940.4945049991435192No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14350.32343421776251136No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10320.23260216915046117No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9920.22358658119889288No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC7230.16295675222459632No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5910.13320531198442107No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5850.1318529737916858No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5520.12441511373164202No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5250.11832959186433344No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5250.11832959186433344No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5050.1138217978885493No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4720.10638393782850547No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)