FastQCFastQC Report
Wed 8 May 2024
EGAF00007961857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480003
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27240.5674964531471679No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23970.4993718789257567No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16550.34478951173221833No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11430.2381235117280517No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10480.2183319687585286No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC7870.1639573086001546No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6400.1333325000052083No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6270.1306241835988525No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5990.12479088672362464No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5950.12395755859859209No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5780.12041591406720374No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5370.11187430078562009No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5110.10645766797290851No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)