FastQCFastQC Report
Wed 8 May 2024
EGAF00007961859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450677
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58901.3069226962991234No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22950.5092338859094208No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15190.3370484848350371No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10560.23431415403936742No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9840.21833818899122873No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC7140.15842832006070867No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6180.13712703332985707No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6150.13646136811951798No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5910.13113604643680507No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5480.12159484508861114No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5210.11560385819555913No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5140.11405063937143453No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4950.10983475970595348No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)