FastQCFastQC Report
Wed 8 May 2024
EGAF00007961869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502466
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27570.548693841971397No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17790.35405380662572195No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15090.3003188275425601No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13290.26449550815378553No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9730.1936449431404314No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9190.18289794732379902No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8240.163991195424168No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7720.15364223648963313No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7350.14627855417082947No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7170.14269622223195202No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6100.12140124903973604No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5960.11861499086505355No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5660.11264443763359114No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5290.10528075531478748No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5200.10348958934534874No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5190.10329057090429998No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5030.10010627584752002No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)