FastQCFastQC Report
Wed 8 May 2024
EGAF00007961871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467065
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61201.3103101281406229No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15280.32714932611092673No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14310.30638133878582213No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12650.2708402470748183No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8760.18755419481228522No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8040.1721387815400426No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7590.16250414824489096No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6860.14687463201053386No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6620.14173616091978633No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6550.14023744018498496No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5720.12246689432948304No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5440.11647201139027759No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5140.11004892252684316No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5000.10705148105724041No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4930.10555276032243907No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4790.10255531885283634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)