FastQCFastQC Report
Wed 8 May 2024
EGAF00007961873

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961873
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504293
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28850.5720880519856513No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17120.3394851802424384No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15470.30676610621206324No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13660.27087427348783344No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10000.19829741836591028No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9170.18183873264153974No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9050.1794591636211488No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7600.15070603795809184No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6930.13742011092757583No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6530.12948821419293943No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5930.1175903690909848No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5810.11521080007059388No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5530.10965847235634839No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5490.10886528268288474No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5340.1058908214073961No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5140.10192487304007788No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)