FastQCFastQC Report
Wed 8 May 2024
EGAF00007961875

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961875
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475147
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64611.3597897071853553No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16640.35020740949642953No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14280.3005385701688109No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12030.25318480386069997No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9230.19425567245505074No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8650.1820489238067377No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8030.16900033042405824No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7210.15174251336954667No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6650.13995668708841685No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6400.13469515749862673No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5810.12227794766672209No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5250.11049212138559225No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5240.11028166020200066No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5210.10965027665122583No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4980.10480966942861894No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4810.10123182930756167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)