FastQCFastQC Report
Wed 8 May 2024
EGAF00007961876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490424
Total Bases21.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11020.22470352185048043No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9230.18820449243919546No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6870.14008286707012707No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT5570.11357519207869109No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5280.10766194150367844No Hit
GTTACCCAGCAGGGTACCGTTACCCAGCAGGTAGTCGACCGGGC5030.10256431169763307No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT4990.10174869092866581No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4920.1003213545829731No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)