FastQCFastQC Report
Wed 8 May 2024
EGAF00007961877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490424
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27700.5648173825098283No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13890.2832243120238814No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11720.23897688530740746No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9160.18677715609350276No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5720.1166337699623183No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5490.11194395054075656No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5490.11194395054075656No Hit
AGCAACACCACTACCATGCACACCTCTTATC5380.1097009934260966No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5230.10664241554246938No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)