FastQCFastQC Report
Wed 8 May 2024
EGAF00007961878

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961878
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454253
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9700.21353738995669816No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8570.18866138473493846No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6280.13824894937402724No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT5140.11315280251313696No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT4960.10919025300878585No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4930.10852982809139401No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4920.10830968645226338No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4700.10346657039138982No Hit
GTTACCCAGCAGGGTACCGTTACCCAGCAGGTAGTCGACCGGGC4660.10258600383486736No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)