FastQCFastQC Report
Wed 8 May 2024
EGAF00007961879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454253
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59551.310943461022822No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12740.28046044825240557No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10210.2247646135523596No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8440.18579954342624044No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5300.11667506873922681No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5220.11491393562618188No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5120.11271251923487573No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4860.10698883661747968No Hit
AGCAACACCACTACCATGCACACCTCTTATC4800.10566798678269598No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)