FastQCFastQC Report
Wed 8 May 2024
EGAF00007961880

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961880
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491544
Total Bases21.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11080.2254121706296893No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9640.19611672607131814No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6270.12755724818124115No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT5590.11372328825089921No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5440.11067167944273555No Hit
GTTACCCAGCAGGGTACCGTTACCCAGCAGGTAGTCGACCGGGC5420.11026479826831372No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT5390.10965447650668099No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5120.1041615806519864No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)