FastQCFastQC Report
Wed 8 May 2024
EGAF00007961881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491544
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28270.5751265400452452No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13350.27159318392656606No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11760.23924613056003127No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9630.19591328548410722No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5920.12043682762885927No Hit
AGCAACACCACTACCATGCACACCTCTTATC5780.11758865940790651No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5490.11168888237879011No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5410.11006135768110281No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5180.10538222417525187No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5100.10375469947756456No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5050.10273749654151003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)