FastQCFastQC Report
Wed 8 May 2024
EGAF00007961882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459559
Total Bases20.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10480.2280447124308304No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9060.19714552429611867No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6050.1316479494471874No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT5520.12011515387578091No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT5310.11554555563050664No Hit
GTTACCCAGCAGGGTACCGTTACCCAGCAGGTAGTCGACCGGGC4980.10836475838793277No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4870.10597115930707482No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4850.10553595947419157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)