FastQCFastQC Report
Wed 8 May 2024
EGAF00007961883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459559
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63581.3835002687358968No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13110.2852734904549797No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10840.2358783094227292No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9080.19758072412900193No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5700.1240319523717303No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT5410.11772155479492295No Hit
AGCAACACCACTACCATGCACACCTCTTATC5190.11293435663320706No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5190.11293435663320706No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4730.10292476047689197No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA4720.10270716056045034No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4680.10183676089468381No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)