FastQCFastQC Report
Wed 8 May 2024
EGAF00007961885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences538939
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29870.5542371214553038No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20700.3840879951163304No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18890.3505034892631634No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13450.24956442194756734No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11740.21783541365534875No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11580.21486661755783124No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11520.21375331902126213No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9300.1725612731682064No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9040.16773697950974042No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8720.16179938731470536No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8680.161057188290326No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8440.15660399414404969No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8060.14955310341244557No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7710.14305886194912598No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7570.14046116536379813No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6850.12710158292496926No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6730.12487498585183111No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6640.12320503804697748No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6640.12320503804697748No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6440.11949404292508058No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6320.11726744585194243No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6040.11207205268128675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)