FastQCFastQC Report
Wed 8 May 2024
EGAF00007961887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499351
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67241.3465478190691518No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17960.3596668475681435No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17550.35145619013479495No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12340.24712076275004957No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10580.21187501376787068No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10560.2114744938930732No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10350.2072690352076996No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8460.16941990703933707No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8270.16561496822876093No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8080.16181002941818481No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7800.15620275117102No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7700.15420015179703256No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7560.15139651267345014No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6880.13777883693033557No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6780.13577623755634813No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6480.12976843943438582No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6250.12516246087421473No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6240.12496220093681598No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5850.11715206337826499No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5840.11695180344086624No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5430.10874114600751775No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5120.10253308794815671No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5120.10253308794815671No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)