FastQCFastQC Report
Wed 8 May 2024
EGAF00007961891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505754
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68101.3465044270534687No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18800.37172222068436434No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17960.3551133555048502No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13030.25763513486793976No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11090.2192765652866809No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10730.21215848020974623No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10570.20899488684221973No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8400.1660886517951415No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8130.16075008798744053No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8070.1595637404746181No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8020.15857511754726605No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7990.15798194379085484No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7790.15402745208144672No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7190.14216397695322233No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7120.14077990485492947No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6830.13504589187628768No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6330.12515966260276734No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6170.12199606923524084No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6070.1200188233805368No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5730.11329618747454295No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5390.10657355156854914No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5270.10420085654290426No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5170.10222361068820018No Hit

[OK]Adapter Content

Adapter graph