FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007961892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513538
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT41720.8124033664499998No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC29430.5730831992958652No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT24690.48078233743169935No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA22960.4470944701268455No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT22220.4326846309328618No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21430.4173011539555008No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA20910.40717532100837717No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT19140.3727085434768216No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA16670.3246108369779841No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15910.3098115426706495No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT15020.29248079012653394No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG14010.272813306902313No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT13480.26249274639851383No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG12800.2492512725445829No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11610.2260786933002037No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10990.21400558478632545No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG9750.189859367758569No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9360.18226499304822621No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG8730.16999715697767254No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7960.15500313511366245No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7410.14429311949651244No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA7080.1378671101262224No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT6820.13280419365266058No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6760.13163582831260784No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6520.1269623669523969No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6470.12598872916901963No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6300.12267836070553688No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT6080.11839435445867687No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5860.11411034821181684No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5840.11372089309846593No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT5520.10748961128485136No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5510.10729488372817592No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5450.10612651838812316No Hit
CGGATACAGTGCCGGGGCGTTATCACCGACCAGACCCAGGAAGC5240.10203723969793861No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)