FastQCFastQC Report
Wed 8 May 2024
EGAF00007961893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513538
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG43710.8511541502284155No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC38440.7485327278604504No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26710.5201173038801412No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG26050.5072652851395613No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT24060.46851450136114564No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT22970.44728919768352093No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA22610.4402790056432046No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG22190.43210044826283545No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT22180.43190572070616No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG17780.34622559576895967No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC16940.3298684810082214No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA15010.2922860625698585No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG14680.2858600531995685No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC14140.2753447651390939No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13950.27164494156226027No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC12010.23386779556722187No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11620.22627342085687913No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC11180.2177054083631591No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9980.19433810156210446No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9330.18168081037819986No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG9130.17778625924469077No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8760.17058133964769892No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8050.15675568312374158No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7930.15441895244363613No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC7450.14507202972321426No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT7100.13825656523957333No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7070.13767238256954695No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6890.13416728654938875No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6780.13202528342595873No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6520.1269623669523969No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6310.12287308826221233No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6280.12228890559218598No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6220.12112054025213324No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT5670.1104105246349832No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5440.10593179083144771No Hit
CTGCAGGCGCCGAAAACTCGCTCCACCACCA5260.10242669481128953No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT5190.10106360191456133No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)