FastQCFastQC Report
Wed 8 May 2024
EGAF00007961895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475810
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62551.314600365692188No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG39680.8339463231121667No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC35310.7421029402492592No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG23690.49788781236207735No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT21800.45816607469368026No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT21720.4564847313003089No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG21140.444294991698367No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20370.4281120615371682No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT20000.4203358483428259No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG15680.3295433051007755No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA14890.3129400390912339No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14840.31188919947037685No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG13160.27658098820957944No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC12880.27069628633277987No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12490.2624997372900948No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC10960.2303440448918686No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10370.21794413736575521No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10170.21374077888232698No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8950.18810029213341461No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8630.18137491855992938No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8630.18137491855992938No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG7790.1637208129295307No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7780.16351064500535928No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6960.14627687522330343No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6870.1443853639057607No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT6630.1393413337256468No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6560.1378701582564469No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6360.13366679977301865No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6220.13072444883461884No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6020.1265210903511906No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5610.11790420546016267No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5340.11222967150753452No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5160.10844664887244909No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT4950.1040331224648494No Hit
CTGCAGGCGCCGAAAACTCGCTCCACCACCA4840.10172127529896387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)