FastQCFastQC Report
Wed 8 May 2024
EGAF00007961896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514803
Total Bases22.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT42190.8195367936861285No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC29910.5809989452275919No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT25210.4897018859641455No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT23750.46134152287379837No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA22970.4461900960173115No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA21120.41025401949872087No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21060.40908852512514493No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT18730.36382849361794706No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT16310.3168202205503853No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT16080.31235249211834426No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA16050.31176974493155635No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG13680.26573271717530783No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT13220.25679726031122585No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG12610.24494806751320408No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11050.21464521380023036No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT11050.21464521380023036No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG10140.19696854913432904No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9130.17734939384580123No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8620.16744269167040596No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8580.16666569542135534No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG8500.16511170292325414No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA7050.1369455888951696No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6970.13539159639706838No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT6900.13403185296122982No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6480.12587339234619846No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6320.12276540734999601No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6130.11907467516700564No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6100.11849192798021768No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6100.11849192798021768No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5940.11538394298401525No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT5530.10741973143124652No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5270.10236925581241757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)