FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007961897

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961897
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514803
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG43960.8539188777066178No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC38360.7451394028395328No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27600.5361274118449193No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG25770.500579833450854No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT24120.46852873817751645No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT23880.4638667606832128No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT23810.4625070172473742No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG22470.4364776429041789No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21670.4209377179231667No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG16940.3290579114729324No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC16660.3236189377295781No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA16180.31429498274097084No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG14200.27583366841296575No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC14050.27291993247902596No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13810.26825795498472227No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC12520.2431998259528402No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC11380.22105543285489787No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11340.22027843660584728No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT10420.20240752287768332No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9190.1785148882193771No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9120.17715514478353855No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG8820.171327672915659No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8190.15908998199311192No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7680.14918327981771667No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC7520.14607529482151424No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7480.14529829857246365No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT7430.1443270532611504No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6990.1357800945215937No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6800.13208936233860333No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6760.1313123660895527No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6490.1260676414084611No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5960.11577244110854054No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT5620.10916797299161038No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5510.10703123330672122No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT5500.10683698424445856No Hit
CTGCAGGCGCCGAAAACTCGCTCCACCACCA5400.10489449362183204No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5360.10411749737278142No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)