FastQCFastQC Report
Wed 8 May 2024
EGAF00007961898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483930
Total Bases21.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT38060.7864773830925961No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26970.5573120079350319No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT22850.47217572789453016No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA22330.461430372161263No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT21660.44758539458186103No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA19920.41162978116669763No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19820.40956336660260784No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT17900.36988820697208274No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA15110.31223524063397595No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14810.3060359969417064No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT14200.29343086810075836No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT13030.2692538177009071No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12760.26367449837786455No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG12100.2500361622548716No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10180.2103610026243465No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9940.20540160767053084No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG9520.1967226665013535No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8680.17936478416299878No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8340.17233897464509332No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8110.16758622114768665No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG7520.15539437521955654No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6730.13906970016324677No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT6380.13183724918893228No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6350.13121732481970533No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6340.13101068336329633No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6020.12439815675820882No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6010.12419151530179985No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5660.11695906432748539No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5440.11241295228648772No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5230.10807348170189902No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT5080.10497385985576427No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5030.10394065257371934No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)