FastQCFastQC Report
Wed 8 May 2024
EGAF00007961899

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961899
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483930
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63831.3189924162585498No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG39000.8059016799950407No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC35230.7279978509288534No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG24350.5031719463558779No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT23150.4783749715867997No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT21450.44324592399727236No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT21280.4397330192383196No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG21060.43518690719732195No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20350.420515363792284No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG15800.3264935011261959No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15420.3186411257826545No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA13730.2837187196495361No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG13440.27772611741367553No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC13130.271320232264997No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12710.26264129109581963No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC11820.24425020147542No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10090.20850122951666566No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10060.2078813051474387No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9800.20250862728080507No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8730.1803979914450437No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8560.17688508668609096No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7870.16262682619387103No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG7730.15973384580414524No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7420.1533279606554667No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6820.1409294732709276No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6670.13782985142479284No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT6600.13638336122992994No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6560.13555679540429402No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6310.1303907589940694No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6170.1274977786043436No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5970.1233649494761639No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5790.11964540326080217No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5200.10745355733267209No Hit
ATGGAACCTGTGCAGCAGCGCCCGGTAATGT5100.10538714276858224No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT5070.10476721839935528No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)