FastQCFastQC Report
Wed 8 May 2024
EGAF00007961900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504140
Total Bases22.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT48650.9650097195223549No Hit
GCGACGCTGACGCGCCAGGGAGTCGTCATCGACTACAACACGAC20350.4036577141270282No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15070.2989249018129885No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14710.2917840282461221No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14570.2890070218590074No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12220.24239298607529655No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG10830.21482127980322926No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10420.20668861824096482No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA7600.15075177530051176No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6880.13647002816677906No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6640.13170944578886817No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6430.12754393620819615No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5840.11584083786249852No Hit
CTGCACGGTAGCTACCATCGGGACCAGGTTGCGGGCCAGAATGC5760.11425397706986155No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC5590.11088189788550801No Hit
GGCAGCCGGACCAAATTCCGGGTTGAAAACACCGTGCGCTACAG5550.1100884674891895No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5400.10711310350299519No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)