FastQCFastQC Report
Wed 8 May 2024
EGAF00007961901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504140
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCAGGGCAAACTGGAATACCGTCACACCT52291.037211885587337No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26960.5347720871186575No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26450.5246558495655969No Hit
GTGGCAGCCAAAAAACTGGTTACCGAGGGTC21190.4203197524497163No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16330.32391795929702066No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14640.2903955250525648No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14540.28841194906176854No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC11310.22434244455905106No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG7740.15352878168762646No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7340.14559447772444162No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7180.1424207561391677No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6900.13686674336493831No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6890.1366683857658587No Hit
TCTTCCGCTACTGCATGCACCGCAGGTGTTA6660.13210616098702743No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6170.122386638632126No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG6120.12139485063672789No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5810.11524576506525964No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5750.11405561947078194No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5570.11048518268734875No Hit
ATGCTGCTGAAAATGAAGGCGCACATTGACC5380.10671638830483596No Hit
GCACCGAAGCCTTCCAAACAGAGCAAGAAGA5200.1031459515214028No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5080.10076566033244733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)