FastQCFastQC Report
Wed 8 May 2024
EGAF00007961903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467883
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61221.3084467698121112No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT47701.0194856406409294No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24860.5313294135499687No Hit
GTGGCAGCCAAAAAACTGGTTACCGAGGGTC18900.4039471406313117No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15050.32166161198419263No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14200.3034946770880754No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13570.29002977240036504No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC9810.20966780156577605No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG7560.16157885625252466No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6750.14426683593975417No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6590.1408471776063674No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6550.1399922630230207No Hit
TCTTCCGCTACTGCATGCACCGCAGGTGTTA6110.1305882026062071No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6080.1299470166686971No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5950.12716854427282034No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5460.11669584062682338No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG5350.11434482552261999No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5280.11284872500176325No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5210.11135262448090655No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT4990.10665059427249973No Hit
ATGCTGCTGAAAATGAAGGCGCACATTGACC4950.10579567968915304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)