FastQCFastQC Report
Wed 8 May 2024
EGAF00007961904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506201
Total Bases22.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT49290.9737238764838473No Hit
GCGACGCTGACGCGCCAGGGAGTCGTCATCGACTACAACACGAC20610.4071505192601358No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15490.306004926896628No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15180.29988087735899377No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13910.2747920292532018No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12720.2512835810280896No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG10500.20742748433922492No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10360.20466178454803524No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA7660.1513232885750917No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7330.1448041390672875No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6680.13196339003676405No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6430.12702464040963965No Hit
CTGCACGGTAGCTACCATCGGGACCAGGTTGCGGGCCAGAATGC6180.12208589078251525No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC6060.11971529096149554No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5600.11062799164758663No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5530.10924514175199179No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5500.10865249179673687No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5330.10529414205029228No Hit
GGCAGCCGGACCAAATTCCGGGTTGAAAACACCGTGCGCTACAG5110.10094804237842281No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)