FastQCFastQC Report
Wed 8 May 2024
EGAF00007961905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506201
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCAGGGCAAACTGGAATACCGTCACACCT53271.052348770547668No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28130.5557081080440378No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27410.5414845091179196No Hit
GTGGCAGCCAAAAAACTGGTTACCGAGGGTC21510.4249300179177837No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16700.3299084750919101No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15300.30225147718001344No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14150.27953322889524124No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC11380.22481188302670282No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG7940.15685468815747106No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7440.14697718890322223No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7360.1453967890225424No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6970.13769233960422836No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6850.13532173978320863No Hit
TCTTCCGCTACTGCATGCACCGCAGGTGTTA6760.13354378991744387No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6400.12643199045438472No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6120.12090059087200539No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG5990.1183324410659007No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5760.11378879140894625No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5760.11378879140894625No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5440.107467191886227No Hit
GCACCGAAGCCTTCCAAACAGAGCAAGAAGA5190.10252844225910263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)