FastQCFastQC Report
Wed 8 May 2024
EGAF00007961906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475767
Total Bases20.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT45580.9580319778378912No Hit
GCGACGCTGACGCGCCAGGGAGTCGTCATCGACTACAACACGAC18630.3915782305204018No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14820.31149701429481236No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14070.2957329953527672No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13220.27786710721844937No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11280.23709084488835924No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9640.2026201901350871No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG9600.20177944245817805No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA7500.1576401894204516No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7190.15112439492440627No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6760.14208635739763373No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6110.12842420764786125No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5720.12022691779799775No Hit
GCGCAGTGGCGGGGAGCCGTCGTTTTCGGAGGACGGCGGCGGAC5650.11875560936340689No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5120.10761570264436163No Hit
CTGCACGGTAGCTACCATCGGGACCAGGTTGCGGGCCAGAATGC5070.10656476804822529No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5010.10530364653286169No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5000.1050934596136344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)