FastQCFastQC Report
Wed 8 May 2024
EGAF00007961907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475767
Total Bases14.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63771.340361983912293No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT48501.0194065582522538No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25660.5393396347371717No Hit
GTGGCAGCCAAAAAACTGGTTACCGAGGGTC18730.3936800997126745No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15190.3192739303062213No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14280.30014692065653986No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13320.27996897641072205No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC10240.21523140528872325No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG7700.16184392780499698No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7460.15679944174354252No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7190.15112439492440627No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6500.13662149749772473No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6290.13220757219395207No Hit
TCTTCCGCTACTGCATGCACCGCAGGTGTTA5890.12380009542486133No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5860.12316953466717953No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5760.12106766547490683No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5590.11749448784804327No Hit
GGCGGCGGTGGCGCAAGCGGTGGCGGCGGTG5410.11371112330195243No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5330.11202962794813429No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5130.10782588956358889No Hit
GCACCGAAGCCTTCCAAACAGAGCAAGAAGA4980.10467308577517986No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGA4870.10236102966367992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)