FastQCFastQC Report
Wed 8 May 2024
EGAF00007961909

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961909
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520459
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28370.5450957712327004No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17010.32682689702743156No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9280.17830415075923367No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6900.13257528450848194No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5830.11201650850499272No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5660.1087501609156533No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5520.10606022760678556No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5410.10394670857838946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)