FastQCFastQC Report
Wed 8 May 2024
EGAF00007961911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483129
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65651.3588503277592527No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16010.33138147368508203No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8610.17821327223164No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5980.12377646549886262No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5370.11115043808175457No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5290.10949456563360924No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5000.10349202800908246No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4840.10018028311279183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)