FastQCFastQC Report
Wed 8 May 2024
EGAF00007961913

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961913
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523545
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29640.5661404463799673No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17820.3403718878033407No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10010.19119655425990123No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6820.13026578422103163No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6340.1210975178828945No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5620.10734511837568882No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5420.103525007401465No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)