FastQCFastQC Report
Wed 8 May 2024
EGAF00007961915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490136
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68171.3908384611618No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16730.3413338338746797No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9060.18484665480601303No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6280.1281277033313203No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5670.11568217800773664No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4980.10160445264171578No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)