FastQCFastQC Report
Wed 8 May 2024
EGAF00007961917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498207
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32350.6493284919722123No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25840.5186599144532292No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20110.403647479862788No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15490.3109149409783484No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13310.2671580286908855No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13180.26454867153612854No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12430.24949468795099225No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12400.24889252860758682No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11960.24006085823764017No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9030.18124996236504104No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8090.16238230293833686No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7960.15977294578357992No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6620.13287649511146973No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6520.13086929730011823No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6520.13086929730011823No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6080.12203762693017159No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5940.11922754999427948No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5720.11481171480930616No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5660.11360739612249528No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5210.10457500597141349No Hit

[OK]Adapter Content

Adapter graph