FastQCFastQC Report
Wed 8 May 2024
EGAF00007961919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461747
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59151.28100453278527No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29010.6282661284209752No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18760.4062830944218371No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13330.28868622860570836No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12140.26291453978044255No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11360.24602217231514228No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11040.23909197027809603No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10620.2299960801044728No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10450.22631441027229196No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8480.1836503539817259No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7900.17108936278957956No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7180.15549640820622548No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6200.1342726644677713No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5820.12604304954877887No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5680.12301108615757114No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5650.12236137971659805No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5250.11369862717029021No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5180.11218264547468634No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4720.10222048004643236No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)